FROM A CELL TO ITS CHEMISTRY
Explore the architecture. Follow the chemistry. Look closer.
Experimental atomic coordinates.
Transparent, illustrative dynamics.
CONCEPTUAL INTEGRATION
THE CHEMISTRY
AH is an electron donor. The lactone subsequently hydrolyzes; that downstream step is omitted. H₂O₂ diffuses between enzymes and can also escape.
LIVE MODEL OBSERVATIONS
Brownian motion is paused until you start or select a mechanism.
Illustrative reaction events. No measured speedup, fitted kinetics, or physical time calibration.
A MODEL YOU CAN AUDIT
PDB heavy-atom positions; hydrogens and crystallographic waters omitted. Frozen internal coordinates, not a dynamic structure determination.
Seeded Brownian diffusion and a precomputed harmonic-tether trajectory. Arbitrary model time; no MD or QM/MM calculation.
Membrane, full origami layout, attachment sites and strand-switch motion are design illustrations, not one experimentally validated cell.
GOx is shown using the deposited protomer reference, not a reconstructed native dimer. HRP uses chain A. The OmpF trimer uses assembly coordinates; its membrane placement is illustrative. The 1BNA duplex is an isolated crystal reference, not the sequence of the designed origami. Atom radii use van der Waals-like display sizes. Bond sticks in the heme view are inferred by distance and do not encode bond order.
The full scaffold is a designed 16-helix array (0.34 nm rise/base pair; 10.5 base pairs/turn; 2.5 nm axis spacing). Crossovers and linkers are illustrative, without staple-sequence routing or steric optimization. The illustrative transport mask uses a geometric opening, not an OmpF free-energy profile or a universal molecular-weight cutoff.
GOx requires an O₂ co-substrate and HRP requires two donor equivalents in the reaction-event model. Water is treated as implicit solvent. Atomic views never show scripted ligand docking as experimentally observed motion. Consult README, model metadata, and coordinate provenance.