{
  "version": "2.1.0",
  "language": "en",
  "renderer": {"library": "Three.js", "version": "0.170.0", "backend": "WebGL 2", "localAssetsOnly": true},
  "coordinates": {"units": "nm", "pdbIds": ["1CF3", "1ATJ", "2OMF", "1BNA"], "manifest": "assets/sources.json", "totalSelectedHeavyAtoms": 15605, "hydrogens": "omitted", "crystallographicWaters": "omitted", "alternateLocations": "blank / A", "internalCoordinates": "frozen"},
  "models": {
    "cell": "Designed 1-um compartment; 4-nm representative shell; subsampled lipids",
    "scaffold": "Designed 16-helix array, no staple routing or oxDNA relaxation",
    "cascade": "Seeded Brownian diffusion with coarse excluded volume and stochastic co-substrate-dependent events",
    "tether": "Precomputed seeded harmonic-tether OU process; not MD",
    "transport": "Independent bidirectional geometric pore mask; not a fitted OmpF model",
    "switch": "Keyframed toehold/branch-migration/hinge illustration; not a calculated pathway",
    "activeSite": "Static experimental HRP heme and neighbors; textual redox cycle only"
  },
  "time": {"guidedTourSeconds": 150, "motionUnits": "arbitrary model time", "physicalCalibration": null},
  "notPerformed": ["all-atom molecular dynamics", "QM/MM", "oxDNA simulation", "ligand docking", "free-energy permeation calculation", "whole-cell atomistic reconstruction"],
  "interpretation": "Experimental coordinate references plus explicitly illustrative motion and conceptual integration; not a validated single-experiment digital twin."
}